1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984
//! Atomic-orbital basis functions.
use std::cmp::Ordering;
use std::collections::{HashMap, HashSet};
use std::convert::TryInto;
use std::fmt;
use std::slice::Iter;
use anyhow::{self, ensure, format_err};
use counter::Counter;
use derive_builder::Builder;
use itertools::{izip, Itertools};
use crate::angmom::ANGMOM_LABELS;
use crate::auxiliary::atom::Atom;
use crate::auxiliary::misc::ProductRepeat;
use crate::permutation::{permute_inplace, PermutableCollection, Permutation};
#[cfg(test)]
#[path = "ao_tests.rs"]
mod ao_tests;
// ---------
// CartOrder
// ---------
// ~~~~~~~~~
// PureOrder
// ~~~~~~~~~
/// Structure to contain information about the ordering of pure Gaussians of a certain rank.
#[derive(Clone, Builder, PartialEq, Eq, Hash)]
pub struct PureOrder {
/// A sequence of $`m_l`$ values giving the ordering of the pure Gaussians.
#[builder(setter(custom))]
mls: Vec<i32>,
/// The rank of the pure Gaussians.
pub lpure: u32,
}
impl PureOrderBuilder {
fn mls(&mut self, mls: &[i32]) -> &mut Self {
let lpure = self.lpure.expect("`lpure` has not been set.");
assert!(
mls.iter()
.map(|m| m.unsigned_abs())
.max()
.expect("The maximum |m| value could not be determined.")
== lpure
);
assert_eq!(mls.len(), (2 * lpure + 1) as usize);
self.mls = Some(mls.to_vec());
self
}
}
impl PureOrder {
/// Returns a builder to construct a new [`PureOrder`] structure.
fn builder() -> PureOrderBuilder {
PureOrderBuilder::default()
}
/// Constructs a new [`PureOrder`] structure from its constituting $`m_l`$ values.
pub fn new(mls: &[i32]) -> Result<Self, anyhow::Error> {
let lpure = mls
.iter()
.map(|m| m.unsigned_abs())
.max()
.expect("The maximum |m| value could not be determined.");
let pure_order = PureOrder::builder()
.lpure(lpure)
.mls(mls)
.build()
.map_err(|err| format_err!(err))?;
ensure!(pure_order.verify(), "Invalid `PureOrder`.");
Ok(pure_order)
}
/// Constructs a new [`PureOrder`] structure for a specified rank with increasing-$`m`$ order.
///
/// # Arguments
///
/// * `lpure` - The required pure Gaussian rank.
///
/// # Returns
///
/// A [`PureOrder`] struct for a specified rank with increasing-$`m`$ order.
#[must_use]
pub fn increasingm(lpure: u32) -> Self {
let lpure_i32 = i32::try_from(lpure).expect("`lpure` cannot be converted to `i32`.");
let mls = (-lpure_i32..=lpure_i32).collect_vec();
Self::builder()
.lpure(lpure)
.mls(&mls)
.build()
.expect("Unable to construct a `PureOrder` structure with increasing-m order.")
}
/// Constructs a new [`PureOrder`] structure for a specified rank with decreasing-$`m`$ order.
///
/// # Arguments
///
/// * `lpure` - The required pure Gaussian rank.
///
/// # Returns
///
/// A [`PureOrder`] struct for a specified rank with decreasing-$`m`$ order.
#[must_use]
pub fn decreasingm(lpure: u32) -> Self {
let lpure_i32 = i32::try_from(lpure).expect("`lpure` cannot be converted to `i32`.");
let mls = (-lpure_i32..=lpure_i32).rev().collect_vec();
Self::builder()
.lpure(lpure)
.mls(&mls)
.build()
.expect("Unable to construct a `PureOrder` structure with decreasing-m order.")
}
/// Constructs a new [`PureOrder`] structure for a specified rank with Molden order.
///
/// # Arguments
///
/// * `lpure` - The required pure Gaussian rank.
///
/// # Returns
///
/// A [`PureOrder`] struct for a specified rank with Molden order.
#[must_use]
pub fn molden(lpure: u32) -> Self {
let lpure_i32 = i32::try_from(lpure).expect("`lpure` cannot be converted to `i32`.");
let mls = (0..=lpure_i32)
.flat_map(|absm| {
if absm == 0 {
vec![0]
} else {
vec![absm, -absm]
}
})
.collect_vec();
Self::builder()
.lpure(lpure)
.mls(&mls)
.build()
.expect("Unable to construct a `PureOrder` structure with Molden order.")
}
/// Verifies if this [`PureOrder`] struct is valid.
///
/// # Returns
///
/// A boolean indicating if this [`PureOrder`] struct is valid.
#[must_use]
pub fn verify(&self) -> bool {
let mls_set = self.mls.iter().collect::<HashSet<_>>();
let lpure = self.lpure;
mls_set.len() == self.ncomps() && mls_set.iter().all(|m| m.unsigned_abs() <= lpure)
}
/// Iterates over the constituent $`m_l`$ values.
pub fn iter(&self) -> Iter<i32> {
self.mls.iter()
}
/// Returns the number of pure components in the shell.
pub fn ncomps(&self) -> usize {
let lpure = usize::try_from(self.lpure).unwrap_or_else(|_| {
panic!(
"Unable to convert the pure degree {} to `usize`.",
self.lpure
)
});
2 * lpure + 1
}
/// Returns the $`m`$ value with a specified index in this shell.
pub fn get_m_with_index(&self, i: usize) -> Option<i32> {
self.mls.get(i).cloned()
}
}
impl fmt::Display for PureOrder {
fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
writeln!(f, "Pure rank: {}", self.lpure)?;
writeln!(f, "Order:")?;
for m in self.iter() {
writeln!(f, " {m}")?;
}
Ok(())
}
}
impl fmt::Debug for PureOrder {
fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
writeln!(f, "Pure rank: {}", self.lpure)?;
writeln!(f, "Order:")?;
for m in self.iter() {
writeln!(f, " {m:?}")?;
}
Ok(())
}
}
impl PermutableCollection for PureOrder {
type Rank = usize;
fn get_perm_of(&self, other: &Self) -> Option<Permutation<Self::Rank>> {
let o_mls: HashMap<&i32, usize> = other
.mls
.iter()
.enumerate()
.map(|(i, o_m)| (o_m, i))
.collect();
let image_opt: Option<Vec<Self::Rank>> =
self.mls.iter().map(|s_m| o_mls.get(s_m).copied()).collect();
image_opt.and_then(|image| Permutation::from_image(image).ok())
}
fn permute(&self, perm: &Permutation<Self::Rank>) -> Result<Self, anyhow::Error> {
let mut p_pureorder = self.clone();
p_pureorder.permute_mut(perm)?;
Ok(p_pureorder)
}
fn permute_mut(&mut self, perm: &Permutation<Self::Rank>) -> Result<(), anyhow::Error> {
permute_inplace(&mut self.mls, perm);
Ok(())
}
}
// ~~~~~~~~~
// CartOrder
// ~~~~~~~~~
/// Structure to contain information about the ordering of Cartesian Gaussians of a certain rank.
#[derive(Clone, Builder, PartialEq, Eq, Hash)]
pub struct CartOrder {
/// A sequence of $`(l_x, l_y, l_z)`$ tuples giving the ordering of the Cartesian Gaussians.
#[builder(setter(custom))]
pub cart_tuples: Vec<(u32, u32, u32)>,
/// The rank of the Cartesian Gaussians.
pub lcart: u32,
}
impl CartOrderBuilder {
fn cart_tuples(&mut self, cart_tuples: &[(u32, u32, u32)]) -> &mut Self {
let lcart = self.lcart.expect("`lcart` has not been set.");
assert!(
cart_tuples.iter().all(|(lx, ly, lz)| lx + ly + lz == lcart),
"Inconsistent total Cartesian orders between components."
);
assert_eq!(
cart_tuples.len(),
((lcart + 1) * (lcart + 2)).div_euclid(2) as usize,
"Unexpected number of components for `lcart` = {}.",
lcart
);
self.cart_tuples = Some(cart_tuples.to_vec());
self
}
}
impl CartOrder {
/// Returns a builder to construct a new [`CartOrder`] structure.
fn builder() -> CartOrderBuilder {
CartOrderBuilder::default()
}
/// Constructs a new [`CartOrder`] structure from its constituting tuples, each of which contains
/// the $`x`$, $`y`$, and $`z`$ exponents for one Cartesian term.
///
/// # Errors
///
/// Errors if the Cartesian tuples are invalid (*e.g.* missing components or containing
/// inconsistent components).
pub fn new(cart_tuples: &[(u32, u32, u32)]) -> Result<Self, anyhow::Error> {
let first_tuple = cart_tuples
.get(0)
.ok_or(format_err!("No Cartesian tuples found."))?;
let lcart = first_tuple.0 + first_tuple.1 + first_tuple.2;
let cart_order = CartOrder::builder()
.lcart(lcart)
.cart_tuples(cart_tuples)
.build()
.map_err(|err| format_err!(err))?;
ensure!(cart_order.verify(), "Invalid `CartOrder`.");
Ok(cart_order)
}
/// Constructs a new [`CartOrder`] structure for a specified rank with lexicographic order.
///
/// # Arguments
///
/// * `lcart` - The required Cartesian Gaussian rank.
///
/// # Returns
///
/// A [`CartOrder`] struct for a specified rank with lexicographic order.
#[must_use]
pub fn lex(lcart: u32) -> Self {
let mut cart_tuples =
Vec::with_capacity(((lcart + 1) * (lcart + 2)).div_euclid(2) as usize);
for lx in (0..=lcart).rev() {
for ly in (0..=(lcart - lx)).rev() {
cart_tuples.push((lx, ly, lcart - lx - ly));
}
}
Self::builder()
.lcart(lcart)
.cart_tuples(&cart_tuples)
.build()
.expect("Unable to construct a `CartOrder` structure with lexicographic order.")
}
/// Constructs a new [`CartOrder`] structure for a specified rank with Molden order.
///
/// # Arguments
///
/// * `lcart` - The required Cartesian Gaussian rank up to 4.
///
/// # Returns
///
/// A [`CartOrder`] struct for a specified rank with Q-Chem order.
///
/// # Panics
///
/// Panics if `lcart` is greater than 4.
#[must_use]
pub fn molden(lcart: u32) -> Self {
assert!(lcart <= 4, "`lcart` > 4 is not specified by Molden.");
let cart_tuples: Vec<(u32, u32, u32)> = match lcart {
0 => vec![(0, 0, 0)],
1 => vec![(1, 0, 0), (0, 1, 0), (0, 0, 1)],
2 => vec![
(2, 0, 0),
(0, 2, 0),
(0, 0, 2),
(1, 1, 0),
(1, 0, 1),
(0, 1, 1),
],
3 => vec![
(3, 0, 0),
(0, 3, 0),
(0, 0, 3),
(1, 2, 0),
(2, 1, 0),
(2, 0, 1),
(1, 0, 2),
(0, 1, 2),
(0, 2, 1),
(1, 1, 1),
],
4 => vec![
(4, 0, 0),
(0, 4, 0),
(0, 0, 4),
(3, 1, 0),
(3, 0, 1),
(1, 3, 0),
(0, 3, 1),
(1, 0, 3),
(0, 1, 3),
(2, 2, 0),
(2, 0, 2),
(0, 2, 2),
(2, 1, 1),
(1, 2, 1),
(1, 1, 2),
],
_ => panic!("`lcart` > 4 is not specified by Molden."),
};
Self::builder()
.lcart(lcart)
.cart_tuples(&cart_tuples)
.build()
.expect("Unable to construct a `CartOrder` structure with Molden order.")
}
/// Constructs a new [`CartOrder`] structure for a specified rank with Q-Chem order.
///
/// # Arguments
///
/// * `lcart` - The required Cartesian Gaussian rank.
///
/// # Returns
///
/// A [`CartOrder`] struct for a specified rank with Q-Chem order.
#[must_use]
pub fn qchem(lcart: u32) -> Self {
let cart_tuples: Vec<(u32, u32, u32)> = if lcart > 0 {
(0..3)
.product_repeat(lcart as usize)
.filter_map(|tup| {
let mut tup_sorted = tup.clone();
tup_sorted.sort_unstable();
tup_sorted.reverse();
if tup == tup_sorted {
let lcartqns = tup.iter().collect::<Counter<_>>();
Some((
<usize as TryInto<u32>>::try_into(*(lcartqns.get(&0).unwrap_or(&0)))
.expect("Unable to convert Cartesian x-exponent to `u32`."),
<usize as TryInto<u32>>::try_into(*(lcartqns.get(&1).unwrap_or(&0)))
.expect("Unable to convert Cartesian y-exponent to `u32`."),
<usize as TryInto<u32>>::try_into(*(lcartqns.get(&2).unwrap_or(&0)))
.expect("Unable to convert Cartesian z-exponent to `u32`."),
))
} else {
None
}
})
.collect()
} else {
vec![(0, 0, 0)]
};
Self::builder()
.lcart(lcart)
.cart_tuples(&cart_tuples)
.build()
.expect("Unable to construct a `CartOrder` structure with Q-Chem order.")
}
/// Verifies if this [`CartOrder`] struct is valid.
///
/// # Returns
///
/// A boolean indicating if this [`CartOrder`] struct is valid.
#[must_use]
pub fn verify(&self) -> bool {
let cart_tuples_set = self.cart_tuples.iter().collect::<HashSet<_>>();
let lcart = self.lcart;
cart_tuples_set.len() == self.ncomps()
&& cart_tuples_set
.iter()
.all(|(lx, ly, lz)| lx + ly + lz == lcart)
}
/// Iterates over the constituent tuples.
pub fn iter(&self) -> Iter<(u32, u32, u32)> {
self.cart_tuples.iter()
}
/// Returns the number of Cartesian components in the shell.
pub fn ncomps(&self) -> usize {
let lcart = usize::try_from(self.lcart).unwrap_or_else(|_| {
panic!(
"Unable to convert the Cartesian degree {} to `usize`.",
self.lcart
)
});
((lcart + 1) * (lcart + 2)).div_euclid(2)
}
/// Returns the Cartesian component with a specified index in this shell.
pub fn get_cart_tuple_with_index(&self, i: usize) -> Option<(u32, u32, u32)> {
self.cart_tuples.get(i).cloned()
}
}
impl fmt::Display for CartOrder {
fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
writeln!(f, "Cartesian rank: {}", self.lcart)?;
writeln!(f, "Order:")?;
for cart_tuple in self.iter() {
writeln!(f, " {}", cart_tuple_to_str(cart_tuple, true))?;
}
Ok(())
}
}
impl fmt::Debug for CartOrder {
fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
writeln!(f, "Cartesian rank: {}", self.lcart)?;
writeln!(f, "Order:")?;
for cart_tuple in self.iter() {
writeln!(f, " {cart_tuple:?}")?;
}
Ok(())
}
}
impl PermutableCollection for CartOrder {
type Rank = usize;
fn get_perm_of(&self, other: &Self) -> Option<Permutation<Self::Rank>> {
let o_cart_tuples: HashMap<&(u32, u32, u32), usize> = other
.cart_tuples
.iter()
.enumerate()
.map(|(i, o_cart_tuple)| (o_cart_tuple, i))
.collect();
let image_opt: Option<Vec<Self::Rank>> = self
.cart_tuples
.iter()
.map(|s_cart_tuple| o_cart_tuples.get(s_cart_tuple).copied())
.collect();
image_opt.and_then(|image| Permutation::from_image(image).ok())
}
fn permute(&self, perm: &Permutation<Self::Rank>) -> Result<Self, anyhow::Error> {
let mut p_cartorder = self.clone();
p_cartorder.permute_mut(perm)?;
Ok(p_cartorder)
}
fn permute_mut(&mut self, perm: &Permutation<Self::Rank>) -> Result<(), anyhow::Error> {
permute_inplace(&mut self.cart_tuples, perm);
Ok(())
}
}
/// Translates a Cartesian exponent tuple to a human-understandable string.
///
/// # Arguments
///
/// * `cart_tuple` - A tuple of $`(l_x, l_y, l_z)`$ specifying the exponents of the Cartesian
/// components of the Cartesian Gaussian.
/// * flat - A flag indicating if the string representation is flat (*e.g.* `xxyz`) or compact
/// (*e.g.* `x^2yz`).
///
/// Returns
///
/// The string representation of the Cartesian exponent tuple.
pub(crate) fn cart_tuple_to_str(cart_tuple: &(u32, u32, u32), flat: bool) -> String {
if cart_tuple.0 + cart_tuple.1 + cart_tuple.2 == 0u32 {
"1".to_string()
} else {
let cart_array = [cart_tuple.0, cart_tuple.1, cart_tuple.2];
let carts = ["x", "y", "z"];
Itertools::intersperse(
cart_array.iter().enumerate().map(|(i, &l)| {
if flat {
carts[i].repeat(l as usize)
} else {
match l.cmp(&1) {
Ordering::Greater => format!("{}^{l}", carts[i]),
Ordering::Equal => carts[i].to_string(),
Ordering::Less => String::new(),
}
}
}),
String::new(),
)
.collect::<String>()
}
}
// ----------
// ShellOrder
// ----------
/// Enumerated type to indicate the type of the angular functions in a shell and how they are
/// ordered.
#[derive(Clone, PartialEq, Eq, Hash, Debug)]
pub enum ShellOrder {
/// This variant indicates that the angular functions are real solid harmonics. The associated
/// value is a [`PureOrder`] struct containing the order of these functions.
Pure(PureOrder),
/// This variant indicates that the angular functions are Cartesian functions. The associated
/// value is a [`CartOrder`] struct containing the order of these functions.
Cart(CartOrder),
}
impl fmt::Display for ShellOrder {
fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
match self {
ShellOrder::Pure(pure_order) => write!(
f,
"Pure ({})",
pure_order.iter().map(|m| m.to_string()).join(", ")
),
ShellOrder::Cart(cart_order) => write!(
f,
"Cart ({})",
cart_order
.iter()
.map(|cart_tuple| { cart_tuple_to_str(cart_tuple, true) })
.join(", ")
),
}
}
}
// ----------
// BasisShell
// ----------
/// Structure representing a shell in an atomic-orbital basis set.
#[derive(Clone, Builder, PartialEq, Eq, Hash, Debug)]
pub struct BasisShell {
/// A non-negative integer indicating the rank of the shell.
#[builder(setter(custom))]
pub l: u32,
/// An enum indicating the type of the angular functions in a shell and how they are ordered.
#[builder(setter(custom))]
pub shell_order: ShellOrder,
}
impl BasisShellBuilder {
fn l(&mut self, l: u32) -> &mut Self {
if let Some(ShellOrder::Cart(cart_order)) = self.shell_order.as_ref() {
assert_eq!(cart_order.lcart, l);
}
self.l = Some(l);
self
}
fn shell_order(&mut self, shl_ord: ShellOrder) -> &mut Self {
if let (ShellOrder::Cart(cart_order), Some(l)) = (shl_ord.clone(), self.l) {
assert_eq!(cart_order.lcart, l);
};
self.shell_order = Some(shl_ord);
self
}
}
impl BasisShell {
/// Returns a builder to construct a new [`BasisShell`].
///
/// # Returns
///
/// A builder to construct a new [`BasisShell`].
fn builder() -> BasisShellBuilder {
BasisShellBuilder::default()
}
/// Constructs a new [`BasisShell`].
///
/// # Arguments
///
/// * `l` - The rank of this shell.
/// * `shl_ord` - A [`ShellOrder`] structure specifying the type and ordering of the basis
/// functions in this shell.
pub fn new(l: u32, shl_ord: ShellOrder) -> Self {
match &shl_ord {
ShellOrder::Cart(cartorder) => assert_eq!(cartorder.lcart, l),
ShellOrder::Pure(pureorder) => assert_eq!(pureorder.lpure, l),
}
BasisShell::builder()
.l(l)
.shell_order(shl_ord)
.build()
.expect("Unable to construct a `BasisShell`.")
}
/// The number of basis functions in this shell.
pub fn n_funcs(&self) -> usize {
let lsize = self.l as usize;
match self.shell_order {
ShellOrder::Pure(_) => 2 * lsize + 1,
ShellOrder::Cart(_) => ((lsize + 1) * (lsize + 2)).div_euclid(2),
}
}
}
// ---------
// BasisAtom
// ---------
/// Structure containing the ordered sequence of the shells for an atom.
#[derive(Clone, Builder, PartialEq, Eq, Hash, Debug)]
pub struct BasisAtom<'a> {
/// An atom in the basis set.
pub(crate) atom: &'a Atom,
/// The ordered shells associated with this atom.
#[builder(setter(custom))]
pub(crate) basis_shells: Vec<BasisShell>,
}
impl<'a> BasisAtomBuilder<'a> {
pub(crate) fn basis_shells(&mut self, bss: &[BasisShell]) -> &mut Self {
self.basis_shells = Some(bss.to_vec());
self
}
}
impl<'a> BasisAtom<'a> {
/// Returns a builder to construct a new [`BasisAtom`].
///
/// # Returns
///
/// A builder to construct a new [`BasisAtom`].
pub(crate) fn builder() -> BasisAtomBuilder<'a> {
BasisAtomBuilder::default()
}
/// Constructs a new [`BasisAtom`].
///
/// # Arguments
///
/// * `atm` - A reference to an atom.
/// * `bss` - A sequence of [`BasisShell`]s containing the basis functions localised on this
/// atom.
pub fn new(atm: &'a Atom, bss: &[BasisShell]) -> Self {
BasisAtom::builder()
.atom(atm)
.basis_shells(bss)
.build()
.expect("Unable to construct a `BasisAtom`.")
}
/// The number of basis functions localised on this atom.
fn n_funcs(&self) -> usize {
self.basis_shells.iter().map(BasisShell::n_funcs).sum()
}
/// The ordered tuples of 0-based indices indicating the starting (inclusive) and ending
/// (exclusive) positions of the shells on this atom.
fn shell_boundary_indices(&self) -> Vec<(usize, usize)> {
self.basis_shells
.iter()
.scan(0, |acc, basis_shell| {
let start_index = *acc;
*acc += basis_shell.n_funcs();
Some((start_index, *acc))
})
.collect::<Vec<_>>()
}
}
// -----------------
// BasisAngularOrder
// -----------------
/// Structure containing the angular momentum information of an atomic-orbital basis set that is
/// required for symmetry transformation to be performed.
#[derive(Clone, Builder, PartialEq, Eq, Hash, Debug)]
pub struct BasisAngularOrder<'a> {
/// An ordered sequence of [`BasisAtom`] in the order the atoms are defined in the molecule.
#[builder(setter(custom))]
pub(crate) basis_atoms: Vec<BasisAtom<'a>>,
}
impl<'a> BasisAngularOrderBuilder<'a> {
pub(crate) fn basis_atoms(&mut self, batms: &[BasisAtom<'a>]) -> &mut Self {
self.basis_atoms = Some(batms.to_vec());
self
}
}
impl<'a> BasisAngularOrder<'a> {
/// Returns a builder to construct a new [`BasisAngularOrder`].
///
/// # Returns
///
/// A builder to construct a new [`BasisAngularOrder`].
#[must_use]
pub(crate) fn builder() -> BasisAngularOrderBuilder<'a> {
BasisAngularOrderBuilder::default()
}
/// Constructs a new [`BasisAngularOrder`] structure from the constituting [`BasisAtom`]s.
///
/// # Arguments
///
/// * `batms` - The constituent [`BasisAtom`]s.
pub fn new(batms: &[BasisAtom<'a>]) -> Self {
BasisAngularOrder::builder()
.basis_atoms(batms)
.build()
.expect("Unable to construct a `BasisAngularOrder`.")
}
/// The number of atoms in the basis.
pub fn n_atoms(&self) -> usize {
self.basis_atoms.len()
}
/// The number of basis functions in this basis.
pub fn n_funcs(&self) -> usize {
self.basis_atoms.iter().map(BasisAtom::n_funcs).sum()
}
/// The ordered tuples of 0-based shell indices indicating the starting (inclusive) and ending
/// (exclusive) shell positions of the atoms in this basis.
pub fn atom_boundary_indices(&self) -> Vec<(usize, usize)> {
self.basis_atoms
.iter()
.scan(0, |acc, basis_atom| {
let start_index = *acc;
*acc += basis_atom.n_funcs();
Some((start_index, *acc))
})
.collect::<Vec<_>>()
}
/// The ordered tuples of 0-based function indices indicating the starting (inclusive) and
/// ending (exclusive) positions of the shells in this basis.
pub fn shell_boundary_indices(&self) -> Vec<(usize, usize)> {
let atom_boundary_indices = self.atom_boundary_indices();
self.basis_atoms
.iter()
.zip(atom_boundary_indices)
.flat_map(|(basis_atom, (atom_start, _))| {
basis_atom
.shell_boundary_indices()
.iter()
.map(|(shell_start, shell_end)| {
(shell_start + atom_start, shell_end + atom_start)
})
.collect::<Vec<_>>()
})
.collect::<Vec<_>>()
}
/// An iterator over the constituent [`BasisShell`]s in this basis.
pub fn basis_shells(&self) -> impl Iterator<Item = &BasisShell> + '_ {
self.basis_atoms
.iter()
.flat_map(|basis_atom| basis_atom.basis_shells.iter())
}
/// Determines the permutation of the functions in this [`BasisAngularOrder`] to map `self` to
/// `other`, given that the shells themselves remain unchanged while only the functions in each
/// shell are permuted.
///
/// For example, consider `self`:
/// ```text
/// S (1)
/// P (x, y, z)
/// D (xx, xy, xz, yy, yz, zz)
/// ```
///
/// and `other`:
/// ```text
/// S (1)
/// P (y, z, x)
/// D (xx, xy, yy, xz, yz, zz)
/// ```
///
/// the mapping permutation is given by `π(0, 3, 1, 2, 4, 5, 7, 6, 8, 9)`.
///
/// # Arguments
///
/// * `other` - Another [`BasisAngularOrder`] to be compared against.
///
/// # Returns
///
/// The mapping permutation, if any.
pub(crate) fn get_perm_of_functions_fixed_shells(
&self,
other: &Self,
) -> Result<Permutation<usize>, anyhow::Error> {
if self.n_funcs() == other.n_funcs() && self.n_atoms() == other.n_atoms() {
let s_shell_boundaries = self.shell_boundary_indices();
let o_shell_boundaries = other.shell_boundary_indices();
if s_shell_boundaries.len() == o_shell_boundaries.len() {
let image = izip!(
self.basis_shells(),
other.basis_shells(),
s_shell_boundaries.iter(),
o_shell_boundaries.iter()
)
.map(|(s_bs, o_bs, (s_start, s_end), (o_start, o_end))| {
if (s_start, s_end) == (o_start, o_end) {
let s_shl_ord = &s_bs.shell_order;
let o_shl_ord = &o_bs.shell_order;
match (s_shl_ord, o_shl_ord) {
(ShellOrder::Pure(s_po), ShellOrder::Pure(o_po)) => Ok(
s_po.get_perm_of(&o_po)
.unwrap()
.image()
.iter()
.map(|x| s_start + x)
.collect_vec(),
),
(ShellOrder::Cart(s_co), ShellOrder::Cart(o_co)) => Ok(
s_co.get_perm_of(&o_co)
.unwrap()
.image()
.iter()
.map(|x| s_start + x)
.collect_vec(),
),
_ => Err(format_err!("At least one pair of corresponding shells have mismatched pure/cart.")),
}
} else {
Err(format_err!("At least one pair of corresponding shells have mismatched boundary indices."))
}
})
.collect::<Result<Vec<_>, _>>()
.and_then(|image_by_shells| {
let flattened_image = image_by_shells.into_iter().flatten().collect_vec();
Permutation::from_image(flattened_image)
});
image
} else {
Err(format_err!("Mismatched numbers of shells."))
}
} else {
Err(format_err!("Mismatched numbers of basis functions."))
}
}
}
impl<'a> PermutableCollection for BasisAngularOrder<'a> {
type Rank = usize;
/// Determines the permutation of [`BasisAtom`]s to map `self` to `other`.
///
/// # Arguments
///
/// * `other` - Another [`BasisAngularOrder`] to be compared with `self`.
///
/// # Returns
///
/// Returns a permutation that permutes the *ordinary* atoms of `self` to give `other`, or
/// `None` if no such permutation exists.
fn get_perm_of(&self, other: &Self) -> Option<Permutation<Self::Rank>> {
let o_basis_atoms: HashMap<&BasisAtom, usize> = other
.basis_atoms
.iter()
.enumerate()
.map(|(i, basis_atom)| (basis_atom, i))
.collect();
let image_opt: Option<Vec<Self::Rank>> = self
.basis_atoms
.iter()
.map(|s_basis_atom| o_basis_atoms.get(s_basis_atom).copied())
.collect();
image_opt.and_then(|image| Permutation::from_image(image).ok())
}
fn permute(&self, perm: &Permutation<Self::Rank>) -> Result<Self, anyhow::Error> {
let mut p_bao = self.clone();
p_bao.permute_mut(perm)?;
Ok(p_bao)
}
fn permute_mut(&mut self, perm: &Permutation<Self::Rank>) -> Result<(), anyhow::Error> {
permute_inplace(&mut self.basis_atoms, perm);
Ok(())
}
}
impl<'a> fmt::Display for BasisAngularOrder<'a> {
fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
let order_length = self
.basis_shells()
.map(|v| v.shell_order.to_string().chars().count())
.max()
.unwrap_or(20);
let atom_index_length = self.n_atoms().to_string().chars().count();
writeln!(f, "{}", "┈".repeat(17 + atom_index_length + order_length))?;
writeln!(f, " {:>atom_index_length$} Atom Shell Order", "#")?;
writeln!(f, "{}", "┈".repeat(17 + atom_index_length + order_length))?;
for (atm_i, batm) in self.basis_atoms.iter().enumerate() {
let atm = batm.atom;
for (shl_i, bshl) in batm.basis_shells.iter().enumerate() {
if shl_i == 0 {
writeln!(
f,
" {:>atom_index_length$} {:<4} {:<5} {:<order_length$}",
atm_i,
atm.atomic_symbol,
ANGMOM_LABELS
.get(usize::try_from(bshl.l).unwrap_or_else(|err| panic!("{err}")))
.copied()
.unwrap_or(&bshl.l.to_string()),
bshl.shell_order
)?;
} else {
writeln!(
f,
" {:>atom_index_length$} {:<4} {:<5} {:<order_length$}",
"",
"",
ANGMOM_LABELS
.get(usize::try_from(bshl.l).unwrap_or_else(|err| panic!("{err}")))
.copied()
.unwrap_or(&bshl.l.to_string()),
bshl.shell_order
)?;
}
}
}
writeln!(f, "{}", "┈".repeat(17 + atom_index_length + order_length))?;
Ok(())
}
}