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//! Human-readable specification of atomic-orbital basis information in QSym² input configuration.
use anyhow::{self, ensure, format_err};
use derive_builder::Builder;
use serde::{Deserialize, Serialize};
use crate::basis::ao::*;
use crate::auxiliary::molecule::Molecule;
// ---------------
// InputShellOrder
// ---------------
/// Serialisable/deserialisable enumerated type to indicate the type of the angular functions in
/// a shell and how they are ordered.
#[derive(Clone, Debug, Serialize, Deserialize)]
pub enum InputShellOrder {
/// This variant indicates that the angular functions are real solid harmonics arranged in
/// increasing $`m`$ order.
PureIncreasingm,
/// This variant indicates that the angular functions are real solid harmonics arranged in
/// decreasing $`m`$ order.
PureDecreasingm,
/// This variant indicates that the angular functions are real solid harmonics arranged in
/// a custom order specified by the $`m_l`$ values.
PureCustom(Vec<i32>),
/// This variant indicates that the angular functions are Cartesian functions arranged in
/// lexicographic order.
CartLexicographic,
/// This variant indicates that the angular functions are Cartesian functions arranged in
/// Q-Chem order.
CartQChem,
/// This variant indicates that the angular functions are Cartesian functions arranged in
/// a custom order specified by the ordered exponent tuples.
CartCustom(Vec<(u32, u32, u32)>),
}
impl InputShellOrder {
/// Converts the [`InputShellOrder`] to a corresponding [`ShellOrder`].
pub fn to_shell_order(&self, l: u32) -> ShellOrder {
match self {
InputShellOrder::PureIncreasingm => ShellOrder::Pure(PureOrder::increasingm(l)),
InputShellOrder::PureDecreasingm => ShellOrder::Pure(PureOrder::decreasingm(l)),
InputShellOrder::PureCustom(mls) => {
ShellOrder::Pure(PureOrder::new(mls).expect("Invalid ml sequence specified."))
}
InputShellOrder::CartLexicographic => ShellOrder::Cart(CartOrder::lex(l)),
InputShellOrder::CartQChem => ShellOrder::Cart(CartOrder::qchem(l)),
InputShellOrder::CartCustom(cart_tuples) => ShellOrder::Cart(
CartOrder::new(cart_tuples).expect("Invalid Cartesian tuples provided."),
),
}
}
}
// ---------------
// InputBasisShell
// ---------------
/// Serialisable/deserialisable structure representing a shell in an atomic-orbital basis set.
#[derive(Clone, Debug, Builder, Serialize, Deserialize)]
pub struct InputBasisShell {
/// A non-negative integer indicating the rank of the shell.
pub l: u32,
/// An enum indicating the type of the angular functions in a shell and how they are ordered.
pub shell_order: InputShellOrder,
}
impl InputBasisShell {
/// Returns a builder to construct [`InputBasisShell`].
pub fn builder() -> InputBasisShellBuilder {
InputBasisShellBuilder::default()
}
/// Returns the number of basis functions in this shell.
pub fn n_funcs(&self) -> usize {
let lsize = self.l as usize;
match self.shell_order {
InputShellOrder::PureIncreasingm
| InputShellOrder::PureDecreasingm
| InputShellOrder::PureCustom(_) => 2 * lsize + 1,
InputShellOrder::CartQChem
| InputShellOrder::CartLexicographic
| InputShellOrder::CartCustom(_) => ((lsize + 1) * (lsize + 2)).div_euclid(2),
}
}
/// Converts the [`InputBasisShell`] to a corresponding [`BasisShell`].
pub fn to_basis_shell(&self) -> BasisShell {
BasisShell::new(self.l, self.shell_order.to_shell_order(self.l))
}
}
// --------------
// InputBasisAtom
// --------------
/// Serialisable/deserialisable structure containing the ordered sequence of the shells for an
/// atom. However, unlike [`BasisAtom`], this structure does not contain a reference to the atom it
/// is describing, but instead it only contains an index and an owned string giving the element
/// name of the atom. This is only for serialisation/deserialisation purposes.
#[derive(Clone, Debug, Builder, Serialize, Deserialize)]
pub struct InputBasisAtom {
/// The index and name of an atom in the basis set.
pub atom: (usize, String),
/// The ordered shells associated with this atom.
pub basis_shells: Vec<InputBasisShell>,
}
impl InputBasisAtom {
/// Returns a builder to construct [`InputBasisAtom`].
pub fn builder() -> InputBasisAtomBuilder {
InputBasisAtomBuilder::default()
}
/// Returns the number of basis functions localised on this atom.
pub fn n_funcs(&self) -> usize {
self.basis_shells.iter().map(InputBasisShell::n_funcs).sum()
}
/// Converts to a [`BasisAtom`] structure given a molecule.
///
/// # Arguments
///
/// * `mol` - A molecule to which the atom in this [`InputBasisAtom`] belongs.
///
/// # Returns
///
/// The corresponding [`BasisAtom`] structure.
///
/// # Errors
///
/// Errors if the atom index and name in this [`InputBasisAtom`] do not match the
/// corresponding atom in `mol`.
pub fn to_basis_atom<'a>(
&self,
mol: &'a Molecule,
) -> Result<BasisAtom<'a>, anyhow::Error> {
let (atm_i, atm_s) = &self.atom;
let atom = &mol
.atoms
.get(*atm_i)
.ok_or(format_err!("Atom index {atm_i} not found."))?;
ensure!(
atom.atomic_symbol == *atm_s,
"Mismatched element names: {} (expected) != {atm_s} (specified).",
atom.atomic_symbol
);
let bss = self
.basis_shells
.iter()
.map(|inp_bs| inp_bs.to_basis_shell())
.collect::<Vec<_>>();
BasisAtom::builder()
.atom(atom)
.basis_shells(&bss)
.build()
.map_err(|err| format_err!(err))
}
}
// ----------------------
// InputBasisAngularOrder
// ----------------------
/// Serialisable/deserialisable structure containing the angular momentum information of an
/// atomic-orbital basis set that is required for symmetry transformation to be performed.However,
/// unlike [`BasisAngularOrder`], this structure does not contain references to the atoms it is
/// describing. This is only for serialisation/deserialisation purposes.
///
/// The associated anonymous field is an ordered sequence of [`InputBasisAtom`] in the order the
/// atoms are defined in the molecule.
#[derive(Clone, Debug, Serialize, Deserialize)]
pub struct InputBasisAngularOrder(pub Vec<InputBasisAtom>);
impl InputBasisAngularOrder {
/// Returns the number of basis functions in this basis set.
pub fn n_funcs(&self) -> usize {
self.0.iter().map(InputBasisAtom::n_funcs).sum()
}
/// Converts to a [`BasisAngularOrder`] structure given a molecule.
///
/// # Arguments
///
/// * `mol` - A molecule to which the atoms in this [`InputBasisAngularOrder`] belong.
///
/// # Returns
///
/// The corresponding [`BasisAngularOrder`] structure.
///
/// # Errors
///
/// Errors if the atom indices and names in this [`InputBasisAngularOrder`] do not match
/// those in `mol`.
pub fn to_basis_angular_order<'a>(
&self,
mol: &'a Molecule,
) -> Result<BasisAngularOrder<'a>, anyhow::Error> {
ensure!(
mol.atoms.len() == self.0.len(),
"Mismatched numbers of atoms: {} (expected) != {} (specified).",
mol.atoms.len(),
self.0.len()
);
let basis_atoms = self
.0
.iter()
.map(|batm| batm.to_basis_atom(mol))
.collect::<Result<Vec<BasisAtom<'a>>, _>>()?;
BasisAngularOrder::builder()
.basis_atoms(&basis_atoms)
.build()
.map_err(|err| format_err!(err))
}
}
impl Default for InputBasisAngularOrder {
fn default() -> Self {
Self(vec![
InputBasisAtom::builder()
.atom((0, "H".to_string()))
.basis_shells(vec![
InputBasisShell::builder()
.l(0)
.shell_order(InputShellOrder::PureIncreasingm)
.build()
.expect("Unable to construct a default input basis shell."),
InputBasisShell::builder()
.l(1)
.shell_order(InputShellOrder::PureDecreasingm)
.build()
.expect("Unable to construct a default input basis shell."),
InputBasisShell::builder()
.l(2)
.shell_order(InputShellOrder::PureCustom(vec![0, 1, -1, 2, -2]))
.build()
.expect("Unable to construct a default input basis shell."),
])
.build()
.expect("Unable to construct a default input basis atom."),
InputBasisAtom::builder()
.atom((1, "O".to_string()))
.basis_shells(vec![
InputBasisShell::builder()
.l(1)
.shell_order(InputShellOrder::CartCustom(vec![
(0, 1, 0),
(1, 0, 0),
(0, 0, 1),
]))
.build()
.expect("Unable to construct a default input basis shell."),
InputBasisShell::builder()
.l(2)
.shell_order(InputShellOrder::CartQChem)
.build()
.expect("Unable to construct a default input basis shell."),
InputBasisShell::builder()
.l(3)
.shell_order(InputShellOrder::CartLexicographic)
.build()
.expect("Unable to construct a default input basis shell."),
])
.build()
.expect("Unable to construct a default input basis atom."),
])
}
}